Haplotype-Specific DNA Methylation
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Gene
GWAS Disease/Phenotype
Genomic Coordinates
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PTPN22
hits 4
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1
rs1230666
chr1:114173409-114173410
genes 2
GWAS disease/phenotype 1
rs1230666
LD Block:
chr1:113822296-114555118
Genes:
MAG13
PTPN22
GWAS Disease/Phenotype:
Serum thyroid peroxidase antibody levels
2
rs6679677
chr1:114303807-114303808
genes 4
GWAS disease/phenotype 4
rs6679677
LD Block:
chr1:113822296-114555118
Genes:
DCLRE1B
PHTF1
PTPN22
RSBN1
GWAS Disease/Phenotype:
Crohns disease
Hypothyroidism
Rheumatoid arthritis
Type 1 diabetes
3
rs2476601
chr1:114377567-114377568
genes 1
GWAS disease/phenotype 5
rs2476601
LD Block:
chr1:113822296-114555118
Genes:
PTPN22
GWAS Disease/Phenotype:
Crohns disease
Myasthenia gravis
Rheumatoid arthritis
Type 1 diabetes
Type 1 diabetes autoantibodies
4
rs11552449
chr1:114448388-114448389
genes 5
GWAS disease/phenotype 1
rs11552449
LD Block:
chr1:113822296-114555118
Genes:
AP4B1
BCL2L15
DCLRE1B
HIPK1
PTPN22
GWAS Disease/Phenotype:
Breast cancer
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